sorry for not posting last week. I have been a bit busy with other stuff.
So far I have done the following.
- Downloaded JSBML maven project
- Created sample program to try out the API for the layout
- Read GSoC 2014 project code by Ibrahim Vazirabad and his blog
As the first step of my project, I must figure out a way to create an API for CellDesigner annotation in a SBML file. Since it will be a standalone software, the software can not use the CellDesigner as Ibrahim did. After this has been resolved, I will be working on to convert the CellDesigner annotation to pure SBML with layout extension.
In Ibrahim's project, he mentioned how CellDesigner classes are mapped to that of SBML. I thought it will be useful so I will post it here for future reference.
Also to check if my conversion is correct, the SBML Layout Viewer by Dr. Frank Bergmann may be come in handy.